Blast2GO Apps

 

Blast2GO

Extend the functionalities of Blast2GO

Blast2GO Apps and our Developer SDK can be used to extend the functionalities of Blast2GO. With Blast2GO Apps you are able to:

  • Share your own bioinformatics tools or visualizations with the Blast2GO Community.
  • Create a tool by wrapping a popular command line program to ease your or your colleagues research.
  • Connect your software/system with a Blast2GO App that integrates Blast2GO into your existing environment.

App Directory

Find here a list of already available tools developed by the Blast2GO Community and us shortly. 

App Type Manual
Psortb
A prediction tool for bacterial protein subcellular localization
FREEK
If you use this tool for your research please cite: PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes. N.Y. Yu, J.R. Wagner, M.R. Laird, G. Melli, S. Rey, R. Lo, P. Dao, S.C. Sahinalp, M. Ester, L.J. Foster, and F.S.L. Brinkman (2010) Bioinformatics 26(13):1608-1615. For more information please visit: http://www.psort.orgAuthor: Blast2GO Team
Version: 1.4.0
Release Date: 2016-05-14
Create GenBank Submission Files
This App automatizes the creation of the .sqn file for the NCBI submission.
PROK
This App allow to combine functional annotations, genome annotations (gff) with its genomics sequence data for direct submission to the NCBI GenBank. The files are created with the help of the tbl2asn tool provided by the NCBI. The App eases the generation of submission files which, once validated, are readily prepared for its submission. This App uses the program tbl2asn available from www.ncbi.nlm.nih.gov/genbank/tbl2asn2/ under the GPL3 license. Author: G. Serrano (Blast2GO Team)
Version: 1.3.5
Release Date: 2016-07-20
GSEA Library
Gene Set Enrichment Analysis (GSEA) is a computational method that determines whether an a priori defined set of genes shows statistically significant, concordant differences between two biological states.
PROK
This App uses the command line interface provided by the Broad Institute to run GSEA directly from within Blast2GO. Remember: this App must be installed in order to run GSEA. GSEA is maintaned by the GSEA Team in the Broad Institue. To cite your use of the GSEA software, please reference Subramanian, Tamayo, et al. (2005, PNAS 102, 15545-15550) and Mootha, Lindgren, et al. (2003, Nat Genet 34, 267-273).Author: Blast2GO Team
Version: 1.1.0
Release Date: 2016-09-12
Venn Diagram
A Venn Diagram is a diagram that shows all possible logical relations between a finite collection of different sets
FREEK
Venn himself did not use the term "Venn diagram" and referred to his invention as "Eulerian Circles"Author: Seanna Hewitt
Version: 1.0.0
Release Date: 2016-08-02
Find Orthologous Groups
Sequence Orthologous Group Annotation via EggNOG database.
PROK
This App allows the annotation of Orthologous Groups into the Blast2GO project. Such information is useful to infer phylogenies and a more complete functional annotation. This App also offers the possibility of performing statistical analysis of the results, and to merge the GO annotations obtained from the Orthologous Groups to the Blast2GO project. This Plug-in uses the EggNOG database (http://eggnogdb.embl.de/) and the UniProt API serviceAuthor: S. Casaní (Blast2GO Team)
Version: 1.3.6
Release Date: 2016-08-25
Coding Potential Assesement Tool
This App allow to calculate the coding potential probability for RNA sequences.
PROK
This App allow to use prebuild models or to build new species-specific models from files or from the NCBI datbase in order to assign to each RNA sequence a coding probability score.Author: G. Serrano (Blast2GO Team)
Version: 1.0.5
Release Date: 2017-03-16

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